Publications

Team publications Bystricky

Kocanova S., Raynal F., Goiffon I., Agkol Oksuz B., Baú D., Kamgoué A., Cantaloube S., Zhang Y., Lajoie B., Marti-Renom M., Job Dekker J. and Bystricky K..
Enhancer-driven local 3D chromatin domain folding modulates transcription in human mammary tumor cells
Life Science Alliance
2023 Dec doi.org/10.1101/2023.10.17.562690, 2023
Ludmila Recoules, Nicolas Tanguy Le Gac, Fatima Moutahir, Kerstin Bystricky *, Anne-Claire Lavigne *.
Recruitment of the histone variant macroH2A1 to the pericentric region occurs upon chromatin relaxation and is responsible for major satellite transcriptional regulation
Cells 2023, 12(17), 2175
2023 Aug
Ludmila Recoules, Alexandre Heurteau, Flavien Raynal, Nezih Karasu, Fatima Moutahir, Fabienne Bejjani, Isabelle Jariel-Encontre, Olivier Cuvier, Thomas Sexton, Anne-Claire Lavigne, Kerstin Bystricky.
The histone variant macroH2A1.1 regulates RNA Polymerase II paused genes within defined chromatin interaction landscapes
J Cell Sci
2022 Apr doi: 10.1242/jcs.259456.
Guilherme M Oliveira, Attila Oravecz, Dominique Kobi, Manon Maroquenne, Kerstin Bystricky, Tom Sexton, Nacho Molina .
Precise measurements of chromatin diffusion dynamics by modeling using Gaussian processes
Nat Communications
2021 Oct 12, 6184 (2021).
Anis Meschichi, Mathieu Ingouff, Claire Picart, Marie Mirouze, Sophie Desset, Franck Gallardo, Kerstin Bystricky, Nathalie Picault, Stefanie Rosa, Frederic Pontvianne .
ANCHOR, a technical approach to monitor single-copy locus localization in planta
Front. Plant Sci.
2021 Jul 06 July 2021
Franck Gallardo, Doris Schmitt, Renée Brandely, Catherine Brua, Nathalie Silvestre, Annie Findeli, Johann Foloppe, Sokunthea Top, Sandrine Kappler-Gratias, Charlotte Quentin-Froignant, Renaud Morin, Jean-Michel Lagarde, Kerstin Bystricky, Stéphane Bertagnoli, Philippe Erbs.
Fluorescent Tagged Vaccinia Virus Genome Allows Rapid and Efficient Measurement of Oncolytic Potential and Discovery of Oncolytic Modulators
Biomedicines
2020 Dec 8:12 p.543
Haitham A Shaban, Roman Barth, Kerstin Bystricky.
Navigating the crowd: visualizing coordination between genome dynamics, structure, and transcription
Genome Biology
2020 Nov 1, 1-18
Barth R., Bystricky K. and Shaban HA .
Coupling chromatin structure and dynamics by live super-resolution imaging
Science Advances
2020 Jul in press; bioRxiv doi.org/10.1101/777482
Kempf N., Moutahir F., Goiffon I., Cantaloube S., Bystricky K. and Lavigne A.-C. .
Analysis of Cellular EMT States Using Molecular Biology and High Resolution FISH Labeling
Methods in Molecular Biology
2020 May chapter; Vol. 2179, Kyra Campbell and Eric Theveneau (Eds): The Epithelial-to Mesenchymal Transition
Audibert S, Tanguy-le-Gac N, Rech J, Turlan C, Bouet JY, Bystricky K, Lane D.
Addressing the role of centromere sites in activation of ParB proteins for partition complex assembly
PLoS One
2020 May 15(5):e0226472. doi: 10.1371/journal.pone.0226472. PMID: 32379828; PMCID: PMC7205306
Shaban HA, Barth R, Recoules L, Bystricky K. .
Hi-D: nanoscale mapping of nuclear dynamics in single living cells.
Genome Biology
2020 Apr 20;21(1):95. doi: 10.1186/s13059-020-02002-6.
Hurtado-Bagès S., Posavec Marjanovic M., Valero V., Malinverni R., Corujo D., Lavigne A.-C., Bystricky K. and Buschbeck M..
The Histone Variant MacroH2A1 Regulates Key Genes for Myogenic Cell Fusion in a Splice-Isoform Dependent Manner
Cells
2020 Apr 9(5), 1109; https://doi.org/10.3390/cells9051109
Shaban HA¶, Barth R. and Bystricky K.¶ .
Nanoscale mapping of nuclear dynamics in living human cells
Genome Biology
2020 Mar bioRxiv doi: https://doi.org/10.1101/405969
Ludmila Recoules1, Alexandre Heurteau1, Flavien Raynal1, Fatima Moutahir1, Fabienne Bejjani3, Isabelle Jariel-Encontre3, Olivier Cuvier1, Anne-Claire Lavigne1¶ and Kerstin Bystricky1,2¶ .
The histone variant macroH2A1.1 activates transcription of paused genes by direct association with their transcription start site.
bioRxiv
2020 Feb bioRxiv doi: https://doi.org/10.1101/2020.01.29.924704
Barth R., Bystricky K. and Shaban HA ¶.
Coupling chromatin structure and dynamics by live super-resolution imaging
bioRxiv
2019 Dec bioRxiv doi: https://doi.org/10.1101/777482; 2019
Socol M, Wang R, Jost D, Carrivain P, Vaillant C, Le Cam E, Dahirel V, Normand C, Bystricky K, Victor J-M, Gadal O, Bancaud, A,.
Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes
Nucleic Acids Res
2019 Jul
Haitham Ahmed Shaban#, Roman Barth, Kerstin Bystricky#.
Nanoscale mapping of DNA dynamics reveals activity-driven genome organization in living human cells
bioRxiv
2018 Dec https://doi.org/10.1101/405969
Marc A. Marti-Renom, Genevieve Almouzni, Wendy A. Bickmore, Kerstin Bystricky, Giacomo Cavalli, Peter Fraser, Susan M. Gasser, Luca Giorgetti, Edith Heard, Mario Nicodemi, Marcelo Nollmann, Modesto Orozco, Ana Pombo, Maria-Elena Torres-Padilla.
Challenges and guidelines toward 4D nucleome data and model standards
Nature Genetics
2018 Oct DOI: 10.1038/s41588-018-0236-3
Komatsu T., Quentin-Froignant C., Carlon-Andres I., Lagadec F., Rayne F., Ragues F., Kehlenbach R., Zhang W., Ehrhardt A., Bystricky K., Morin R., Lagarde JM., Gallardo F. and Wodrich H.# .
In vivo labelling of adenovirus DNA identifies chromatin anchoring and biphasic genome replication
Journal of Virology
2018 Sep DOI: 10.1128/JVI.00795-18
Bernard Mariamé, Sandrine Kappler-Gratias, Martin Kappler, Stéphanie Balor, Franck Gallardo, and Kerstin Bystricky .
Real-time visualization and quantification of human Cytomegalovirus replication in living cells using the ANCHOR DNA labeling technology.
Journal of Virology
2018 Jun Accepted manuscript posted online 27 June 2018 , doi:10.1128/JVI.00571-18 Abstract Manuscript OPEN ACCESS ARTICLE
Germier T1, Audibert S, Kocanova S, Lane D, Bystricky K..
Real-time imaging of specific genomic loci in eukaryotic cells using the ANCHOR DNA labelling system.
Methods
2018 Jun
Thomas Germier, Sylvain Audibert, Silvia Kocanova, David Lane and Kerstin Bystricky.
Real-time imaging of specific genomic loci in eukaryotic cells using the ANCHOR DNA labelling system
METHODS
2018 May https://doi.org/10.1016/j.ymeth.2018.04.008
Haitham Ahmed Shaban#$, Roman Barth$, Kerstin Bystricky#.
Formation of correlated chromatin domains at nanoscale dynamic resolution during transcription
Nucleic Acid Research
2018 Apr in press; https://doi.org/10.1101/230789 bioRxiv
Silvia Kocanova#, Isabelle Goiffon and Kerstin Bystricky#.
3D FISH to analyse gene domain-specific chromatin re-modeling in human cancer cells
METHODS
2018 Mar doi:10.1016/j.ymeth.2018.02.013
Gomez-Lamarca MJ, Falo-Sanjuan J, Stojnic R, Rehman SA, Muresan L, Cerda-Moya G, Jones ML, Pillidge Z, Yuan Z, Valenti P, Bystricky K, Payre F, O’Holleran K, Kovall R, Bray S .
Activation of the Notch signalling pathway in vivo elicits changes in CSL nuclear dynamics
Developmental Cell
2018 Feb 44 (1-16) 2018, doi.org/10.1016/j.devcel.2018.01.020
Thomas Germier, Silvia Kocanova, Nike Walther, Aurélien Bancaud, Hafida Sellou, Alessandro.Z.Politi, Jan Ellenberg, Franck Gallardo and Kerstin Bystricky.
Real-time imaging of a single gene reveals transcription-initiated local confinement
Biophysical Journal
2017 Oct Volume 113, Issue 7, 3 October 2017, Pages 1383–1394
Aurélien Bancaud, Olivier Gadal, Kerstin Bystricky.
Capturing chromosome structural properties from their spatial and temporal fluctuations
Epigenetics and Systems Biology Chapter 12. , 2017
2017 May doi: http://dx.doi.org/10.1016/B978-0-12-803075-2.00012-Xl
Lapierre M*, Linares A*, Dalvai M, Duraffourd C, Bonnet S, Boulahtouf A, Rodriguez C, Jalaguier S, Assou S, Orsetti B, Balaguer P, Maudelonde T, Blache P, Bystricky K, Boulle N#, Cavaillès V#.
“Histone deacetylase 9 regulates breast cancer cell proliferation and the response to histone deacetylase inhibitors”
Oncotarget
2016 Feb doi: 10.18632/oncotarget.7564
Khallouki F, de Medina P, Caze-Subra S, Bystricky K, Balaguer P, Poirot M#, Silvente-Poirot S# .
“Molecular and biochemical analysis of the estrogenic and proliferative properties of vitamin E compounds”
Frontiers in Oncology,
2016 Jan Jan 5;5:287. doi: 10.3389/fonc.2015.00287
Mariamé B., Kappler-Gratias S., Balor S., Gallardo F., Bystricky K. .
Real-time imaging of virus replication using an auto-fluorescent DNA-based system
2016 Jan in preparation
Belton JM., Lajoie BR., Audibert A., Cantaloube C., Lassadi I., Goiffon I., Bau D., Marti-Renom M., Bystricky K. and Dekker J#. .
“The recombination enhancer modulates the conformation of chromosome 3 in budding yeast.”
Cell Reports,
2015 Nov 13(9):1855-67, 2015 DOI: 10.1016/j.celrep.2015.10.063
Bystricky K..
“Chromosome dynamics and folding in eukaryotes: insights from live cell microscopy”
FEBS Letters Special Issue 3D Genome Structure
2015 Jul pii: S0014-5793(15)00611-0. doi: 10.1016/j.febslet.2015.07.012.
Bayindir I., Babaeikelishomi R., Kocanova S., Sofia Sousa I., Lerch S., Hardt O., Wild S., Bosio A., Bystricky K., Herzig S, Vegiopoulos A.#.
“Transcriptional pathways in adipocyte progenitor activation for browning”
Frontiers in Endocrinology
2015 Jul vol 6
Lassadi I.*, Kamgoué A*., Goiffon I., Tanguy-le-Gac N. and Bystricky K.# .
“Differential chromosome conformations as hallmarks of cellular identity revealed by mathematical polymer modeling. ”
PLoS Computational Biology
2015 May DOI 10.1371/journal.pcbi.1004306
F., Lehmann-Che J.,Kraus-Berthier L., Nicolas A., Lockhart B.P., Marangoni E., de Thé H., Depil S., Bystricky K. and Decaudin D. .
“HDAC inhibition does not induce Estrogen Receptor in human triple negative breast cancer cell lines and Patient-Derived Xenografts. ”
BCRT (Breast Cancer Research and Therapy)
2015 Jan 149 (1) p.81-89, DOI: 10.1007/s10549-014-3233-y
Queval R., Papin C., Dalvai M., Bystricky K. and Humbert O.# .
“Reptin and Pontin oligomerization and activity are modulated through histone H3 amino-terminal tail interaction.”
Journal of Biological Chemistry
2014 Nov 289 (49) p. 33999-4012, DOI: 10.1074/jbc.M114.57678
Lavigne A.-C.#, Castells M., Dalvai M., Mermet J., Kocanova S. and Bystricky K..
“Increased macroH2A1.1 Expression Correlates with Poor Survival of Triple-Negative Breast Cancer Patients”
PLoS ONE
2014 Jun 9(6): e98930. doi:10.1371/journal.pone.0098930
Saad H.*, Gallardo F.*, Dalvai M., Tanguy le Gac N., Lane D. and Bystricky K.# .
“Early steps of double strand break processing revealed by non-intrusive imaging of DNA loci in living cells.”
PLoS Genetics
2014 Mar march 13, doi/10.1371/journal.pgen.1004187
Hajjoul H.*, Mathon J.*, Ranchon H., Goiffon I., Mocciconazzi J., Albert B., Carrivain P., Victor J.M., Gadal O., Bystricky K., Bancaud A.# .
“Chromosome dynamics in living yeast: quantitative determination of the physical parameters that govern chromatin movements”
Genome Research
2013 Oct doi: 10.1101/gr.157008.113
Dalvai M., Fleury L., Kocanova S., Bellucci L. and Bystricky K.# .
“Tip48/reptin required for promoter-enhancer crosstalk in transcription activation”
PLoS Genetics
2013 Sep 9(4): e1003387. doi:10.1371/journal.pgen.1003387
Bellucci L.*, Dalvai M.*, Kocanova S., Moutahir F. and Bystricky K.# .
“Activation of p21 by HDAC inhibitors requires H2A.Z”
PLoS ONE
2013 Aug 8(1):e54102. doi:10.1371/ journal.pone.0054102
Dalvai M., Bellucci L., Fleury L., Lavigne AC., Moutahir F. and Bystricky K#. .
“H2AZ dependent intragenic looping regulates cyclin D1 expression”
Oncogene
2013 Jan 5;32(36):4243-51. doi 10.038 PMID:2318396
Bystricky K.#, Gallardo F., Lane D., Dubarry N. .
“Visualisation de la position et de la dynamique de loci d’ADN dans les cellules vivantes en utilisant un nouveau groupe de petits opérateurs bactériens ”
patent
2012 Sep WO/2012/127047
full list of publications : http://www.researcherid.com/rid/B-8670-2009.
or see https://scholar.google.fr/citations?user=jUMXSIYAAAAJ&hl=fr
2012 Jan
2011 May Imen Lassadi and Kerstin Bystricky “3D live cell analysis of chromosome organization” Methods Mol Biol, may 29, 2011
2010 Jun Mathieu Dalvai and Kerstin Bystricky, “Cell cycle and anti-estrogen effects synergize to regulate cell proliferation and ER target gene expression” PLoS ONE, June 8 2010.
2010 Jan de Medina P, Genovese S, Silvente-Poirot S, Paillasse M, Mazaheri M, Caze-Subra S, Bystricky K, Curini M, Epifano F and Poirot M. “Structure-based Identification of ER and ACAT as molecular targets involved in the chemopreventive activity of the citrus auraptene” Mol Pharmacol Nov;78(5):827-36 2010.
2010 Jan Silvia Kocanova*, Mahta Mazaheri*, Stephanie Caze-Subra and Kerstin Bystricky “Ligands specify estrogen receptor alpha nuclear localization and degradation” BMC Cell Biology 11:98, 2010.
2010 Jan Mathieu Dalvai and Kerstin Bystricky “The Role of Histone Modifications and Variants in Regulating Gene Expression in Breast Cancer” J Mam Gland Biology Neoplasia Vol 15 (1), p.19, 2010. review
2010 Jan Silvia Kocanova*, Elizabeth Kerr*, Sehrish Rafique, Shelagh Boyle, Stephanie Caze-Subra, Wendy Bickmore and Kerstin Bystricky “Activation of estrogen responsive genes does not require nuclear co-localisation” PloS Genetics, 6(4): e1000922. doi:10.1371, 2010.
2009 Jan Silvia Kocanova and Kerstin Bystricky “Genome Duality” Genome Biology 10:308, 2009. meeting review
2009 Jan Miele A, Bystricky K, Dekker J “Yeast mating type loci form heterochromatic clusters through silencer protein-dependent long-range interactions” PLoS Genetics 5 (5), 2009.
2009 Jan Hajjoul H, Kocanova S, Lassadi I, Bystricky K and Bancaud A “Lab-on-Chip for fast 3D particle tracking in living cells” Lab-on–a-Chip 9(21):3054-8, 2009.
2009 Jan Susu He, Kerstin Bystricky, Jean M Francois and Jean Luc Parrou “Acid trehalase (Ath1) is targeted to the cell surface and the vacuole in yeast S.cerevisiae” FEBS Journal 276: 5432-5446, 2009.
2009 Jan Kerstin Bystricky, Haico van Attikum, Maria D. Montiel, Vincent Dion, Lutz Gehlen and Susan M.Gasser “Regulation of nuclear positioning and dynamics of the silent mating type loci by the yeast Ku70 complex” Mol.Cell Biol., 29(3):835-48, 2009.
2008 Jan Laurence Fleury, Marie Gérus, Anne-Claire Lavigne, Hélène Richard-Foy and Kerstin Bystricky “Impairment of estrogen receptor binding responsible for gene silencing in hormone-independent mammary tumor cells ” Oncogene 27:4075-4085, 2008.
http://www.researcherid.com/rid/B-8670-2009
1980 Dec

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