CBI -

Team publications Cuvier

Heurteau A, Perrois C, Depierre D, Fosseprez O, Humbert J, Schaak S, Cuvier O.
Insulator-based loops mediate the spreading of H3K27me3 over distant micro-domains repressing euchromatin genes.
Genome Biol.
2020 Aug
Farré P, Heurteau A, Cuvier O, Emberly E.
Dense neural networks for predicting chromatin conformation.
BMC Bioinformatics
2018 Oct ; 19(1):372. doi: 10.1186/s12859-018-2286-z.
Mourad R, Cuvier O.
TAD-free analysis of architectural proteins and insulators.
Nucleic Acids Res
2018 Mar ; 46(5):e27. doi: 10.1093/nar/gkx1246.
Mourad R, Ginalski K, Legube G, Cuvier O.
Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution.
Genome Biol.
2018 Mar ; 19(1):34. doi: 10.1186/s13059-018-1411-7.
Mourad R, Ginalski K, Legube G, Cuvier O.
Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution
Genome Biology
2018 Mar
Cuvier O, Fierz B.
Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells.
Nat Rev Genet
2017 Aug ; 18(8):457-472. doi: 10.1038/nrg.2017.28.
Mourad R, Li L, Cuvier O.
Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach.
PLoS Comput Biol
2017 May ; 13(5):e1005538. doi: 10.1371/journal.pcbi.1005538.
Mourad R, Cuvier O.
Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation.
PLoS Comput Biol
2016 May ; 12(5):e1004908. doi: 10.1371/journal.pcbi.1004908.
Bedrat A, Lacroix L, Mergny JL.
Re-evaluation of G-quadruplex propensity with G4Hunter.
Nucleic Acids Res
2016 Feb ; 44(4):1746-59. doi: 10.1093/nar/gkw006.
Mourad R, Cuvier O.
Predicting the spatial organization of chromosomes using epigenetic data.
Genome Biol
2015 Aug ; 16:182. doi: 10.1186/s13059-015-0752-8.
Saberi S, Farré P, Cuvier O, Emberly E.
Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data.
BMC Bioinformatics
2015 May ; 16:171. doi: 10.1186/s12859-015-0584-2.
Stadelmayer B, Micas G, Gamot A, Martin P, Malirat N, Koval S, Raffel R, Sobhian B, Severac D, Rialle S, Parrinello H, Cuvier O, Benkirane M.
Integrator complex regulates NELF-mediated RNA polymerase II pause/release and processivity at coding genes.
Nat Commun
2014 Nov ; 5:5531. doi: 10.1038/ncomms6531.
Vogelmann J, Le Gall A, Dejardin S, Allemand F, Gamot A, Labesse G, Cuvier O, Nègre N, Cohen-Gonsaud M, Margeat E, Nöllmann M.
Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome.
PLoS Genet
2014 Aug ; 10(8):e1004544. doi: 10.1371/journal.pgen.1004544.
Lhoumaud P, Hennion M, Gamot A, Cuddapah S, Queille S, Liang J, Micas G, Morillon P, Urbach S, Bouchez O, Severac D, Emberly E, Zhao K, Cuvier O.
Insulators recruit histone methyltransferase dMes4 to regulate chromatin of flanking genes.
EMBO J
2014 Jul ; 33(14):1599-613. doi: 10.15252/embj.201385965.
Liang J, Lacroix L, Gamot A, Cuddapah S, Queille S, Lhoumaud P, Lepetit P, Martin PG, Vogelmann J, Court F, Hennion M, Micas G, Urbach S, Bouchez O, Nöllmann M, Zhao K, Emberly E, Cuvier O.
Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing.
Mol Cell
2014 Feb ; 53(4):672-81. doi: 10.1016/j.molcel.2013.12.029.
Vogelmann J, Valeri A, Guillou E, Cuvier O, Nollmann M.
Roles of chromatin insulator proteins in higher-order chromatin organization and transcription regulation.
Nucleus
2011 Sep ; 2(5):358-69. doi: 10.4161/nucl.2.5.17860.
Chang HY, Cuvier O, Dekker J.
Gene dates, parties and galas. Symposium on Chromatin Dynamics and Higher Order Organization.
EMBO Rep
2009 Jul ; 10(7):689-93. doi: 10.1038/embor.2009.136.
Jiang N, Emberly E, Cuvier O, Hart CM.
Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription.
Mol Cell Biol
2009 Jul ; 29(13):3556-68. doi: 10.1128/MCB.01748-08.
Emberly E, Blattes R, Schuettengruber B, Hennion M, Jiang N, Hart CM, Käs E, Cuvier O.
BEAF regulates cell-cycle genes through the controlled deposition of H3K9 methylation marks into its conserved dual-core binding sites.
PLoS Biol
2008 Dec ; 6(12):2896-910. doi: 10.1371/journal.pbio.0060327.

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