Teams
Team publications Cuvier
Insulator-based loops mediate the spreading of H3K27me3 over distant micro-domains repressing euchromatin genes.
Genome Biol.
2020 Aug
Dense neural networks for predicting chromatin conformation.
BMC Bioinformatics
2018 Oct ; 19(1):372. doi: 10.1186/s12859-018-2286-z.
TAD-free analysis of architectural proteins and insulators.
Nucleic Acids Res
2018 Mar ; 46(5):e27. doi: 10.1093/nar/gkx1246.
Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution.
Genome Biol.
2018 Mar ; 19(1):34. doi: 10.1186/s13059-018-1411-7.
Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution
Genome Biology
2018 Mar
Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells.
Nat Rev Genet
2017 Aug ; 18(8):457-472. doi: 10.1038/nrg.2017.28.
Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach.
PLoS Comput Biol
2017 May ; 13(5):e1005538. doi: 10.1371/journal.pcbi.1005538.
Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation.
PLoS Comput Biol
2016 May ; 12(5):e1004908. doi: 10.1371/journal.pcbi.1004908.
Re-evaluation of G-quadruplex propensity with G4Hunter.
Nucleic Acids Res
2016 Feb ; 44(4):1746-59. doi: 10.1093/nar/gkw006.
Predicting the spatial organization of chromosomes using epigenetic data.
Genome Biol
2015 Aug ; 16:182. doi: 10.1186/s13059-015-0752-8.
Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data.
BMC Bioinformatics
2015 May ; 16:171. doi: 10.1186/s12859-015-0584-2.
Integrator complex regulates NELF-mediated RNA polymerase II pause/release and processivity at coding genes.
Nat Commun
2014 Nov ; 5:5531. doi: 10.1038/ncomms6531.
Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome.
PLoS Genet
2014 Aug ; 10(8):e1004544. doi: 10.1371/journal.pgen.1004544.
Insulators recruit histone methyltransferase dMes4 to regulate chromatin of flanking genes.
EMBO J
2014 Jul ; 33(14):1599-613. doi: 10.15252/embj.201385965.
Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing.
Mol Cell
2014 Feb ; 53(4):672-81. doi: 10.1016/j.molcel.2013.12.029.
Roles of chromatin insulator proteins in higher-order chromatin organization and transcription regulation.
Nucleus
2011 Sep ; 2(5):358-69. doi: 10.4161/nucl.2.5.17860.
Gene dates, parties and galas. Symposium on Chromatin Dynamics and Higher Order Organization.
EMBO Rep
2009 Jul ; 10(7):689-93. doi: 10.1038/embor.2009.136.
Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription.
Mol Cell Biol
2009 Jul ; 29(13):3556-68. doi: 10.1128/MCB.01748-08.
BEAF regulates cell-cycle genes through the controlled deposition of H3K9 methylation marks into its conserved dual-core binding sites.
PLoS Biol
2008 Dec ; 6(12):2896-910. doi: 10.1371/journal.pbio.0060327.